Sequences directing C to U editing of the plastid psbL mRNA are located within a 22 nucleotide segment spanning the editing site.
- 1 November 1996
- journal article
- Published by Springer Nature in The EMBO Journal
- Vol. 15 (21) , 5958-5964
- https://doi.org/10.1002/j.1460-2075.1996.tb00982.x
Abstract
In plastids, editing of an ACG codon to an AUG codon creates the translation initiation codon for the psbL and ndhD transcripts in tobacco. To identify the RNA segment required for psbL editing, chimeric kanamycin resistance genes were constructed containing psbL deletion derivatives, and tested in vivo for editing in transgenic plants. We report here that a 22 nucleotide segment is sufficient to direct efficient psbL editing, including 16 nucleotides upstream and five nucleotides downstream of the editing site. Mutation of the A nucleotide to a C upstream of the editing site completely abolished editing, while mutation of the downstream G to a C only reduced the editing efficiency. Out of the 22 nucleotide editing target sequence, the 16 upstream nucleotides were found to compete with the endogenous psbL transcript for a depletable trans-factor. To test whether editing of initiation codons involves a common trans-factor, a chimeric gene containing the ndhD editing site was expressed in tobacco plastids. As for psbL, editing of the ndhD site requires a depletable trans-factor. However, the ndhD trans-factor is distinct from that required for psbL editing. Distinct cissequences and trans-factor requirements for the psbL and ndhD editing sites indicate an individual recognition mechanism for the editing of plastid initiation codons.Keywords
This publication has 21 references indexed in Scilit:
- Complete Sequence of the Maize Chloroplast Genome: Gene Content, Hotspots of Divergence and Fine Tuning of Genetic Information by Transcript EditingJournal of Molecular Biology, 1995
- Evidence for a Site-specific Cytidine Deamination Reaction Involved in C to U RNA Editing of Plant MitochondriaJournal of Biological Chemistry, 1995
- Sense from nonsense: RNA editing in mitochondria of kinetoplastid protozoa and slime moldsCell, 1995
- A place in the world for RNA editingCell, 1995
- The role of RNA editing in conservation of start codons in chloroplast genomesGene, 1994
- RNA editing in trypanosomesEuropean Journal of Biochemistry, 1994
- RNA editing in maize chloroplasts is a processing step independent of splicing and cleavage to monocistronic mRNAsThe Plant Journal, 1993
- RNA editing: Exploring one mode with apolipoprotein B mRNABioEssays, 1993
- The psbL gene from bell pepper (Capsicum annuum): plastid RNA editing also occurs in non-photosynthetic chromoplastsPlant Molecular Biology, 1992
- Cytochrome b-559 genes from Oenothera hookeri and Nicotiana tabacum show a remarkably high degree of conservation as compared to spinachCurrent Genetics, 1986