Noise-induced cooperative behavior in a multicell system
Open Access
- 17 March 2005
- journal article
- research article
- Published by Oxford University Press (OUP) in Bioinformatics
- Vol. 21 (11) , 2722-2729
- https://doi.org/10.1093/bioinformatics/bti392
Abstract
Motivation: All cell components exhibit intracellular noise on account of random births and deaths of individual molecules, and extracellular noise because of environment perturbations. Gene regulation in particular, is an inherently noisy process with transcriptional control, alternative splicing, translation, diffusion and chemical modification reactions, all of which involve stochastic fluctuations. Such stochastic noises may not only affect the dynamics of the entire system but may also be exploited by living organisms to actively facilitate certain functions, such as cooperative behavior and communication. Results: We have provided a general model and an analytic tool to examine the cooperative behavior of a multicell system with both intracellular and extracellular stochastic fluctuations. A multicell system with a synthetic gene network is adopted to demonstrate the effects of noises and coupling on collective dynamics. These results establish not only a theoretical foundation but also a quantitative basis for understanding essential roles of noises on cooperative dynamics, such as synchronization and communication among cells. Availability: Contact:chen@elec.osaka-sandai.ac.jp Supplementary information:http://www.sat.t.u-tokyo.ac.jp/research.html or http://www.elec.osaka-sandai.ac.jp/lab/chen/support.htmlKeywords
This publication has 35 references indexed in Scilit:
- Dynamics of gene regulatory networks with cell division cyclePhysical Review E, 2004
- Design of artificial cell–cell communication using gene and metabolic networksProceedings of the National Academy of Sciences, 2004
- A model of periodic oscillation for genetic regulatory systemsIEEE Transactions on Circuits and Systems I: Regular Papers, 2002
- Stability of genetic regulatory networks with time delayIEEE Transactions on Circuits and Systems I: Regular Papers, 2002
- Engineering stability in gene networks by autoregulationNature, 2000
- A synthetic oscillatory network of transcriptional regulatorsNature, 2000
- Noise-Induced Nonequilibrium Phase TransitionPhysical Review Letters, 1994
- Global bifurcations of phase-locked oscillatorsArchive for Rational Mechanics and Analysis, 1986
- The Fuller index and global Hopf bifurcationJournal of Differential Equations, 1978
- Global Bifurcations of Periodic OrbitsAmerican Journal of Mathematics, 1978