Molecular Dynamics Simulations Highlight the Structural Differences among DNA:DNA, RNA:RNA, and DNA:RNA Hybrid Duplexes
- 1 May 1997
- journal article
- research article
- Published by American Chemical Society (ACS) in Journal of the American Chemical Society
- Vol. 119 (21) , 4805-4825
- https://doi.org/10.1021/ja963641w
Abstract
No abstract availableKeywords
This publication has 72 references indexed in Scilit:
- JUMNA (junction minimisation of nucleic acids)Computer Physics Communications, 1995
- AMBER, a package of computer programs for applying molecular mechanics, normal mode analysis, molecular dynamics and free energy calculations to simulate the structural and energetic properties of moleculesComputer Physics Communications, 1995
- Molecular Dynamics with Weighted Time-averaged Restraints for a DNA OctamerJournal of Molecular Biology, 1993
- The conformation of the DNA double helix in the crystal is dependent on its environmentNature, 1989
- The MIDAS display systemJournal of Molecular Graphics, 1988
- Local mobility of nucleic acids as determined from crystallographic dataJournal of Molecular Biology, 1984
- CHARMM: A program for macromolecular energy, minimization, and dynamics calculationsJournal of Computational Chemistry, 1983
- Ordered water structure around a B-DNA dodecamerJournal of Molecular Biology, 1983
- Mechanics of sequence-dependent stacking of bases in B-DNAJournal of Molecular Biology, 1982
- Optimised parameters for A-DNA and B-DNABiochemical and Biophysical Research Communications, 1972