Expansion of the σ-hole concept
Top Cited Papers
- 11 December 2008
- journal article
- Published by Springer Nature in Journal of Molecular Modeling
- Vol. 15 (6) , 723-729
- https://doi.org/10.1007/s00894-008-0386-9
Abstract
The term “σ-hole” originally referred to the electron-deficient outer lobe of a half-filled p (or nearly p) orbital involved in forming a covalent bond. If the electron deficiency is sufficient, there can result a region of positive electrostatic potential which can interact attractively (noncovalently) with negative sites on other molecules (σ-hole bonding). The interaction is highly directional, along the extension of the covalent bond giving rise to the σ-hole. σ-Hole bonding has been observed, experimentally and computationally, for many covalently-bonded atoms of Groups V–VII. The positive character of the σ-hole increases in going from the lighter to the heavier (more polarizable) atoms within a Group, and as the remainder of the molecule becomes more electron-withdrawing. In this paper, we show computationally that significantly positive σ-holes, and subsequent noncovalent interactions, can also occur for atoms of Group IV. This observation, together with analogous ones for the molecules (H3C)2SO, (H3C)2SO2 and Cl3PO, demonstrates a need to expand the interpretation of the origins of σ-holes: (1) While the bonding orbital does require considerable p character, in view of the well-established highly directional nature of σ-hole bonding, a sizeable s contribution is not precluded. (2) It is possible for the bonding orbital to be doubly-occupied and forming a coordinate covalent bond. Figure Two views of the calculated electrostatic potential on the 0.001 au molecular surface of SiCl4. Color ranges, in kcal/mole, are: purple, negative; blue, between 0 and 8; green, between 8 and 11; yellow, between 11 and 18; red, more positive than 18. The top view shows three of the four chlorines. In the center is the σ-hole due to the fourth Cl−Si bond, its most positive portion (red) being on the extension of that bond. In the bottom view are visible two of the σ-holes on the silicon. In both views can be seen the σ-holes on the chlorines, on the extensions of the Si−Cl bonds; their most positive portions are greenKeywords
This publication has 26 references indexed in Scilit:
- Why are dimethyl sulfoxide and dimethyl sulfone such good solvents?Journal of Molecular Modeling, 2008
- σ-hole bonding between like atoms; a fallacy of atomic chargesJournal of Molecular Modeling, 2008
- Use of ab initio calculations to provide insights into the strength and nature of interfluorine interactionsInternational Journal of Quantum Chemistry, 2008
- σ-hole bonding: molecules containing group VI atomsJournal of Molecular Modeling, 2007
- Halogen bonding and the design of new materials: organic bromides, chlorides and perhaps even fluorides as donorsJournal of Molecular Modeling, 2007
- A predicted new type of directional noncovalent interactionInternational Journal of Quantum Chemistry, 2007
- An overview of halogen bondingJournal of Molecular Modeling, 2006
- Halogen bonding: the σ-holeJournal of Molecular Modeling, 2006
- Intermolecular interactions from a natural bond orbital, donor-acceptor viewpointChemical Reviews, 1988
- The crystal structure of POCl3Acta Crystallographica Section B: Structural Science, Crystal Engineering and Materials, 1971