An approach to computing electrostatic charges for molecules
- 1 April 1984
- journal article
- research article
- Published by Wiley in Journal of Computational Chemistry
- Vol. 5 (2) , 129-145
- https://doi.org/10.1002/jcc.540050204
Abstract
We present an approach for deriving net atomic charges from ab initio quantum mechanical calculations using a least squares fit of the quantum mechanically calculated electrostatic potential to that of the partial charge model. Our computational approach is similar to those presented by Momany [J. Phys. Chem., 82, 592 (1978)], Smit, Derissen, and van Duijneveldt [Mol. Phys., 37, 521 (1979)], and Cox and Williams [J. Comput. Chem., 2, 304 (1981)], but differs in the approach to choosing the positions for evaluating the potential. In this article, we present applications to the molecules H2O, CH3OH, (CH3)2O, H2CO, NH3, (CH3O)2PO, deoxyribose, ribose, adenine, 9‐CH3 adenine, thymine, 1‐CH3 thymine, guanine, 9‐CH3 guanine, cytosine, 1‐CH3 cytosine, uracil, and 1‐CH3 uracil. We also address the question of inclusion of “lone pairs,” their location and charge.Keywords
This publication has 28 references indexed in Scilit:
- Studies of nucleotide conformations and interactions. The relative stabilities of double‐helical B‐DNA sequence isomersBiopolymers, 1981
- AMBER: Assisted model building with energy refinement. A general program for modeling molecules and their interactionsJournal of Computational Chemistry, 1981
- Experimental studies of molecular interactions between nitrogen bases of nucleic acidsBiopolymers, 1979
- Energy parameters in polypeptides. 8. Empirical potential energy algorithm for the conformational analysis of large moleculesThe Journal of Physical Chemistry, 1978
- Electrostatic potentials of proteins. 1. Carboxypeptidase AJournal of the American Chemical Society, 1976
- Consistent force field calculations. III. Vibrations, conformations, and heats of hydrogenation of nonconjugated olefinsJournal of the American Chemical Society, 1973
- Model conformational study of nucleic acid phosphate ester bonds. Torsional potential of dimethyl phosphate monoanionJournal of the American Chemical Society, 1973
- Study of the Structure of Molecular Complexes. I. Energy Surface of a Water Molecule in the Field of a Lithium Positive IonThe Journal of Chemical Physics, 1972
- Calculation of molecular electric dipole and quadrupole momentsJournal of the American Chemical Society, 1972
- Stereochemistry of nucleic acids and polynucleotides III. Electronic charge distributionBiopolymers, 1971