ProViz: protein interaction visualization and exploration
- 3 September 2004
- journal article
- Published by Oxford University Press (OUP) in Bioinformatics
- Vol. 21 (2) , 272-274
- https://doi.org/10.1093/bioinformatics/bth494
Abstract
Summary: ProViz is a tool for the visualization of protein–protein interaction networks, developed by the IntAct European project. It provides facilities for navigating in large graphs and exploring biologically relevant features, and adopts emerging standards such as GO and PSI-MI.Availability: ProViz is available under the GPL and may be freely downloaded. Source code and binaries are available at http://cbi.labri.fr/eng/proviz.htmContact: david.sherman@labri.frKeywords
This publication has 11 references indexed in Scilit:
- The HUPO PSI's Molecular Interaction format—a community standard for the representation of protein interaction dataNature Biotechnology, 2004
- IntAct: an open source molecular interaction databaseNucleic Acids Research, 2004
- Tulip — A Huge Graph Visualization FrameworkPublished by Springer Nature ,2004
- Cytoscape: A Software Environment for Integrated Models of Biomolecular Interaction NetworksGenome Research, 2003
- Osprey: a network visualization systemGenome Biology, 2003
- Generating protein interaction maps from incomplete data: application to fold assignmentBioinformatics, 2001
- Protein–protein interaction maps: a lead towards cellular functionsTrends in Genetics, 2001
- Towards an understanding of complex protein networksTrends in Cell Biology, 2001
- An information-based sequence distance and its application to whole mitochondrial genome phylogenyBioinformatics, 2001
- A divide-and-conquer algorithm for the automatic layout of large directed graphsIEEE Transactions on Systems, Man, and Cybernetics, 1991