AMiGA: the arthropodan mitochondrial genomes accessible database
Open Access
- 29 January 2006
- journal article
- research article
- Published by Oxford University Press (OUP) in Bioinformatics
- Vol. 22 (7) , 902-903
- https://doi.org/10.1093/bioinformatics/btl021
Abstract
Summary: The Arthropodan Mitochondrial Genomes Accessible database (AMiGA) is a relational database developed to help in managing access to the increasing amount of data arising from developments in arthropodan mitochondrial genomics (136 mitochondrial genomes as of September 2005). The strengths of AMiGA include (1) a more accessible and up-to-date database containing a more comprehensive set of mitochondrial genomes for this phylum, (2) the provision of flexible search options for retrieving detailed information such as bibliographical data, genomic graphics, FASTA sequences and taxonomical status, (3) the possibility of enhanced comparative analyses by multiple alignment of single or concatenated sets of genes, (4) more accurate and updated information resulting from a specific curation process called AMiGA Notes and (5) the possibility of including unpublished sequences in a password-restricted area for comparative analysis with the other sequences stored in the database. Availability: Contact:lessinger@amiga.cbmeg.unicamp.br Supplementary information: Detailed information, including an illustrated tutorial, is available from the above URL.Keywords
This publication has 14 references indexed in Scilit:
- MamMiBase: a mitochondrial genome database for mammalian phylogenetic studiesBioinformatics, 2005
- A high-throughput screening of genes that encode proteins transported into the endoplasmic reticulum in mammalian cellsNucleic Acids Research, 2005
- GenBankNucleic Acids Research, 2004
- NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteinsNucleic Acids Research, 2004
- OGRe: a relational database for comparative analysis of mitochondrial genomesNucleic Acids Research, 2003
- The Bioperl Toolkit: Perl Modules for the Life SciencesGenome Research, 2002
- Organelle genome resources at NCBITrends in Biochemical Sciences, 2001
- CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choiceNucleic Acids Research, 1994
- Basic Local Alignment Search ToolJournal of Molecular Biology, 1990
- Basic local alignment search toolJournal of Molecular Biology, 1990