Quantitative and predictive model of transcriptional control of the Drosophila melanogaster even skipped gene
- 17 September 2006
- journal article
- research article
- Published by Springer Nature in Nature Genetics
- Vol. 38 (10) , 1159-1165
- https://doi.org/10.1038/ng1886
Abstract
Here we present a quantitative and predictive model of the transcriptional readout of the proximal 1.7 kb of the control region of the Drosophila melanogaster gene even skipped (eve). The model is based on the positions and sequence of individual binding sites on the DNA and quantitative, time-resolved expression data at cellular resolution. These data demonstrated new expression features, first reported here. The model correctly predicts the expression patterns of mutations in trans, as well as point mutations, insertions and deletions in cis. It also shows that the nonclassical expression of stripe 7 driven by this fragment is activated by the protein Caudal (Cad), and repressed by the proteins Tailless (Tll) and Giant (Gt).Keywords
This publication has 39 references indexed in Scilit:
- Functional Evolution of a cis-Regulatory ModulePLoS Biology, 2005
- Transcriptional Control in the Segmentation Gene Network of DrosophilaPLoS Biology, 2004
- Computational identification of developmental enhancers: conservation and function of transcription factor binding-site clusters in Drosophila melanogaster and Drosophila pseudoobscuraGenome Biology, 2004
- A self-organizing system of repressor gradients establishes segmental complexity in DrosophilaNature, 2003
- Computational detection of genomic cis- regulatory modules applied to body patterning in the early Drosophila embryoBMC Bioinformatics, 2002
- Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genomeProceedings of the National Academy of Sciences, 2002
- Regulation of Two Pair-Rule Stripes by a Single Enhancer in theDrosophilaEmbryoDevelopmental Biology, 1996
- Short-range repression permits multiple enhancers to function autonomously within a complex promoter.Genes & Development, 1994
- Early and late periodic patterns of even skipped expression are controlled by distinct regulatory elements that respond to different spatial cuesCell, 1989
- Expression of a β-globin gene is enhanced by remote SV40 DNA sequencesPublished by Elsevier ,1981