Is water structure around hydrophobic groups clathrate-like?
- 29 August 1995
- journal article
- Published by Proceedings of the National Academy of Sciences in Proceedings of the National Academy of Sciences
- Vol. 92 (18) , 8308-8312
- https://doi.org/10.1073/pnas.92.18.8308
Abstract
The term "clathrate structure" is quantified for solvation of nonpolar groups by enumerating hydrogen-bonded ring sizes both in the solvation shell and through the shell-bulk interface and comparing it to a bulk control using the ST4 water model. For clathrate-like structure to be evident, the distributions along the hydrophobic surface are expected to be dominated by pentagons, with significant depletion of hexagons and larger polygons. While the distribution in this region is indeed distinguished by a large number of pentagons, there are significant contributions from hexagons and larger rings as well. Calculated polygon distributions through the shell-bulk interface indicate that when water structure is highly cooperative along the hydrophobic surface, hydrogen-bonded pathways leading back into bulk are then reduced. These results are qualitatively consistent with the observation that hydrophobicity is proportional to the nonpolar solute surface area.Keywords
This publication has 4 references indexed in Scilit:
- Dominant forces in protein foldingBiochemistry, 1990
- Stability of Protein Structure and Hydrophobic InteractionAdvances in Protein Chemistry, 1988
- Water RevisitedScience, 1980
- Some Factors in the Interpretation of Protein DenaturationAdvances in Protein Chemistry, 1959