Evidence for recombinatorial hot spots at the T cell receptor Jα locus

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Abstract
The complex genomic organization of the murine T cell receptor (TcR) δ‐α region has hindered detailed studies of α gene rearrangement and Jα gene usage in individual differentiating T cell precursors. We have isolated a novel set of Jα probes which, in combination with a few restriction enzyme digests, enable a reliable, simple and nearly complete analysis and location of any rearrangement at the Jα locus by conventional Southern blotting. The probes were used to analyze TcR α gene rearrangements in T cell hybridomas derived from an in vitro culture system that supports T cell differentiation of bone marrow cells. Our results indicate that Jα genes are unequally accessible for rearrangement and two hot spots for rearrangement could be demonstrated. In addition, only a restricted set of Jα genes was rearranged in each culture indicating that the slightly variable composition of factors can influence the recombinatorial accessibility of Jα genes. The hot spots for rearrangement were not only limited to T cells differentiating in vitro but could also be demonstrated among functional T cell clones based on the published sequence information from isolated TcR α gene rearrangements. The demonstration and the location of the hot spots for rearrangement in the T cell differentiation culture system opens up the possibility to study factors and mechanisms that regulate recombinatorial accessibility of TcR α genes.