The YH database: the first Asian diploid genome database
Open Access
- 8 December 2008
- journal article
- research article
- Published by Oxford University Press (OUP) in Nucleic Acids Research
- Vol. 37 (Databae) , D1025-D1028
- https://doi.org/10.1093/nar/gkn966
Abstract
The YH database is a server that allows the user to easily browse and download data from the first Asian diploid genome. The aim of this platform is to facilitate the study of this Asian genome and to enable improved organization and presentation large-scale personal genome data. Powered by GBrowse, we illustrate here the genome sequences, SNPs, and sequencing reads in the MapView. The relationships between phenotype and genotype can be searched by location, dbSNP ID, HGMD ID, gene symbol and disease name. A BLAST web service is also provided for the purpose of aligning query sequence against YH genome consensus. The YH database is currently one of the three personal genome database, organizing the original data and analysis results in a user-friendly interface, which is an endeavor to achieve fundamental goals for establishing personal medicine. The database is available at http://yh.genomics.org.cn.Keywords
This publication has 13 references indexed in Scilit:
- The diploid genome sequence of an Asian individualNature, 2008
- The complete genome of an individual by massively parallel DNA sequencingNature, 2008
- SOAP: short oligonucleotide alignment programBioinformatics, 2008
- A second generation human haplotype map of over 3.1 million SNPsNature, 2007
- The Diploid Genome Sequence of an Individual HumanPLoS Biology, 2007
- Finishing the euchromatic sequence of the human genomeNature, 2004
- Human Gene Mutation Database (HGMD®): 2003 updateHuman Mutation, 2003
- Initial sequencing and analysis of the human genomeNature, 2001
- Basic Local Alignment Search ToolJournal of Molecular Biology, 1990
- Basic local alignment search toolJournal of Molecular Biology, 1990