Phylogenetic Analysis of Culturable Dimethyl Sulfide-Producing Bacteria from a Spartina -Dominated Salt Marsh and Estuarine Water

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Abstract
Dimethylsulfoniopropionate (DMSP), an abundant osmoprotectant found in marine algae and salt marsh cordgrass, can be metabolized to dimethyl sulfide (DMS) and acrylate by microbes having the enzyme DMSP lyase. A suite of DMS-producing bacteria isolated from a salt marsh and adjacent estuarine water on DMSP agar plates differed markedly from the pelagic strains currently in culture. While many of the salt marsh and estuarine isolates produced DMS and methanethiol from methionine and dimethyl sulfoxide, none appeared to be capable of producing both methanethiol and DMS from DMSP. DMSP, and its degradation products acrylate and β-hydroxypropionate but not methyl-3-mecaptopropionate or 3-mercaptopropionate, served as a carbon source for the growth of all the α- and β- but only some of the γ-proteobacterium isolates. Phylogenetic analysis of 16S rRNA gene sequences showed that all of the isolates were in the group Proteobacteria , with most of them belonging to the α and γ subclasses. Only one isolate was identified as a β-proteobacterium, and it had >98% 16S rRNA sequence homology with a terrestrial species of Alcaligenes faecalis . Although bacterial population analysis based on culturability has its limitations, bacteria from the α and γ subclasses of the Proteobacteria were the dominant DMS producers isolated from salt marsh sediments and estuaries, with the γ subclass representing 80% of the isolates. The α-proteobacterium isolates were all in the Roseobacter subgroup, while many of the γ-proteobacteria were closely related to the pseudomonads; others were phylogenetically related to Marinomonas, Psychrobacter , or Vibrio species. These data suggest that DMSP cleavage to DMS and acrylate is a characteristic widely distributed among different phylotypes in the salt marsh-estuarine ecosystem.

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