BioMart Central Portal—unified access to biological data
Open Access
- 6 May 2009
- journal article
- research article
- Published by Oxford University Press (OUP) in Nucleic Acids Research
- Vol. 37 (suppl_2) , W23-W27
- https://doi.org/10.1093/nar/gkp265
Abstract
BioMart Central Portal (www.biomart.org) offers a one-stop shop solution to access a wide array of biological databases. These include major biomolecular sequence, pathway and annotation databases such as Ensembl, Uniprot, Reactome, HGNC, Wormbase and PRIDE; for a complete list, visit, http://www.biomart.org/biomart/martview. Moreover, the web server features seamless data federation making cross querying of these data sources in a user friendly and unified way. The web server not only provides access through a web interface (MartView), it also supports programmatic access through a Perl API as well as RESTful and SOAP oriented web services. The website is free and open to all users and there is no login requirement.Keywords
This publication has 13 references indexed in Scilit:
- BioMart – biological queries made easyBMC Genomics, 2009
- Ensembl 2009Nucleic Acids Research, 2008
- The Universal Protein Resource (UniProt)Nucleic Acids Research, 2007
- PRIDE: new developments and new datasetsNucleic Acids Research, 2007
- The HGNC Database in 2008: a resource for the human genomeNucleic Acids Research, 2007
- A second generation human haplotype map of over 3.1 million SNPsNature, 2007
- Reactome: a knowledge base of biologic pathways and processesGenome Biology, 2007
- The Universal Protein Resource (UniProt)Nucleic Acids Research, 2006
- WormBase: new content and better accessNucleic Acids Research, 2006