Saccharomyces cerevisiae and Schizosaccharomyces pombe contain a homologue to the 54-kD subunit of the signal recognition particle that in S. cerevisiae is essential for growth.
Open Access
- 1 December 1989
- journal article
- research article
- Published by Rockefeller University Press in The Journal of cell biology
- Vol. 109 (6) , 3223-3230
- https://doi.org/10.1083/jcb.109.6.3223
Abstract
We have isolated and sequenced genes from Saccharomyces cerevisiae (SRP54SC) and Schizosaccharomyces pombe (SRP54sp) encoding proteins homologous to both the 54-kD protein subunit (SRP54mam) of the mammalian signal recognition particle (SRP) and the product of a gene of unknown function in Escherichia coli, ffh (Römisch, K., J. Webb, J. Herz, S. Prehn, R. Frank, M. Vingron, and B. Dobberstein. 1989. Nature (Lond.). 340:478-482; Bernstein H. D., M. A. Poritz, K. Strub, P. J. Hoben, S. Brenner, P. Walter. 1989. Nature (Lond.). 340:482-486). To accomplish this we took advantage of short stretches of conserved sequence between ffh and SRP54mam and used the polymerase chain reaction (PCR) to amplify fragments of the homologous yeast genes. The DNA sequences predict proteins for SRP54sc and SRP54sp that are 47% and 52% identical to SRP54mam, respectively. Like SRP54mam and ffh, both predicted yeast proteins contain a GTP binding consensus sequence in their NH2-terminal half (G-domain), and methionine-rich sequences in their COOH-terminal half (M-domain). In contrast to SRP54mam and ffh the yeast proteins contain additional Met-rich sequences inserted at the COOH-terminal portion of the M-domain. SRP54sp contains a 480-nucleotide intron located 78 nucleotides from the 5' end of the open reading frame. Although the function of the yeast homologues is unknown, gene disruption experiments in S. cerevisiae show that the gene is essential for growth. The identification of SRP54sc and SRP54sp provides the first evidence for SRP related proteins in yeast.This publication has 39 references indexed in Scilit:
- Model for signal sequence recognition from amino-acid sequence of 54K subunit of signal recognition particleNature, 1989
- Homology of 54K protein of signal-recognition particle, docking protein and two E. coli proteins with putative GTP–binding domainsNature, 1989
- Identification of genes from pattern formation, tyrosine kinase, and potassium channel families by DNA amplification.Proceedings of the National Academy of Sciences, 1989
- Human SRP RNA and E. coli 4.5S RNA contain a highly homologous structural domainCell, 1988
- Genetic analysis of small nuclear RNAs in Saccharomyces cerevisiae: viable sextuple mutant.Molecular and Cellular Biology, 1988
- Photocrosslinking of the signal sequence of nascent preprolactin to the 54-kilodalton polypeptide of the signal recognition particle.Proceedings of the National Academy of Sciences, 1986
- The signal sequence of nascent preprolactin interacts with the 54K polypeptide of the signal recognition particleNature, 1986
- Genomic sequencing.Proceedings of the National Academy of Sciences, 1984
- Amphipathic analysis and possible formation of the ion channel in an acetylcholine receptor.Proceedings of the National Academy of Sciences, 1984
- Analysis of the accuracy and implications of simple methods for predicting the secondary structure of globular proteinsJournal of Molecular Biology, 1978