Three‐dimensional structure of a recombinant peroxidase from Coprinus cinereus at 2.6 Å resolution
- 21 February 1994
- journal article
- Published by Wiley in FEBS Letters
- Vol. 339 (3) , 291-296
- https://doi.org/10.1016/0014-5793(94)80433-8
Abstract
The structure of a recombinant peroxidase from the ink cap, Coprinus cinereus, CiP, is reported to 2.6 Å resolution and refined to a R‐value of 18.1%. The structure was solved by molecular replacement using the coordinates from a newly published ligninase structure, LiP. CiP crystallizes in space group P212121) with two independent molecules in the asymmetric unit related by the vector 0.29b + 0.5C. The two CiP molecules are structurally identical; each contains two Ca2+ ions in positions equivalent to those found in the LiP structure. Two N‐acetylglucosamines and one mannose residue were fitted into the density adjacent to two of the three predicted glycosylation sites. The refinement also included 40 and 41 water molecules, respectively, in the two CiP molecules. The structure of CiP displays a folding very similar to that of LiP. The active sites are almost identical in the LiP and CiP structures. CiP has a much larger opening to the active site than LiP.Keywords
This publication has 17 references indexed in Scilit:
- Solvent content of protein crystalsPublished by Elsevier ,2006
- Crystallization and X-ray Diffraction Analysis of Recombinant Coprinus cinereus PeroxidaseJournal of Molecular Biology, 1993
- SETOR: Hardware-lighted three-dimensional solid model representations of macromoleculesJournal of Molecular Graphics, 1993
- Amino acid sequence of Coprinus macrorhizus peroxidase and cDNA sequence encoding Coprinus cinereus peroxidaseEuropean Journal of Biochemistry, 1993
- Low pH crystal structure of glycosylated lignin peroxidase from Phanerochaete chrysosporium at 2.5 Å resolutionFEBS Letters, 1993
- Comparison of structure and activities of peroxidases from Coprinus cinereus, Coprinus macrorhizus and Arthromyces ramosusBiochimica et Biophysica Acta (BBA) - Protein Structure and Molecular Enzymology, 1992
- Free R value: a novel statistical quantity for assessing the accuracy of crystal structuresNature, 1992
- Accurate computation of the rotation matricesActa Crystallographica Section A Foundations of Crystallography, 1990
- On the fast rotation functionActa Crystallographica Section A Foundations of Crystallography, 1987
- Dictionary of protein secondary structure: Pattern recognition of hydrogen‐bonded and geometrical featuresBiopolymers, 1983