Inner-Sphere Reorganization Energy of Iron−Sulfur Clusters Studied with Theoretical Methods
- 25 April 2001
- journal article
- research article
- Published by American Chemical Society (ACS) in Inorganic Chemistry
- Vol. 40 (11) , 2509-2519
- https://doi.org/10.1021/ic000752u
Abstract
Models of several types of iron−sulfur clusters (e.g., Fe4S4(SCH3)42-/3-/4-) have been studied with the density functional B3LYP method and medium-sized basis sets. In a vacuum, the inner-sphere reorganization energies are 40, 76, 40, 62, 43, and 42 kJ/mol for the rubredoxin, [2Fe−2S] ferredoxin, Rieske, [4Fe−4S] ferredoxin, high-potential iron protein, and desulfoferrodoxin models, respectively. The first two types of clusters were also studied in the protein, where the reorganization energy was approximately halved. This change is caused by the numerous NH···SCys hydrogen bonds to the negatively charged iron−sulfur cluster, giving rise to a polar local environment. The reorganization energy of the iron−sulfur clusters is low because the iron ions retain the same geometry and coordination number in both oxidation states. Cysteine ligands give approximately the same reorganization energy as imidazole, but they have the advantage of stabilizing a lower coordination number and giving more covalent bonds and therefore more effective electron-transfer paths.This publication has 61 references indexed in Scilit:
- New aspects of H2 activation by nickel-iron hydrogenaseInternational Journal of Quantum Chemistry, 1999
- Desulfoferrodoxin structure determined by MAD phasing and refinement to 1.9-Å resolution reveals a unique combination of a tetrahedral FeS4 centre with a square pyramidal FeSN4 centreJBIC Journal of Biological Inorganic Chemistry, 1997
- Are unit charges always negligible?JBIC Journal of Biological Inorganic Chemistry, 1997
- Control of reduction potential by protein matrix: lesson from a spherical protein modelJBIC Journal of Biological Inorganic Chemistry, 1997
- The Cupric Geometry of Blue Copper Proteins is not StrainedJournal of Molecular Biology, 1996
- Valence electron delocalization in polynuclear iron-sulfur clustersJBIC Journal of Biological Inorganic Chemistry, 1996
- Effect of the Asn52 → Ile mutation on the redox potential of yeast cytochrome c: Theory and experimentJournal of Molecular Biology, 1992
- Studies on vitamin B12 and related compounds. 49. Direct synthesis of alkyl- and of .omega.-carboxyalkylcobalamins from vitamin B12 and aliphatic carboxylic acids under "oxidizing-reducing" conditionsJournal of the American Chemical Society, 1979
- Fluorescence X-ray absorption studies of rubredoxin and its model compoundsJournal of Molecular Biology, 1978
- Synthetic analogs of the active sites of iron-sulfur proteins. XI. Synthesis and properties of complexes containing the iron sulfide (Fe2S2) core and the structures of bis[o-xylyl-.alpha.,.alpha.'-dithiolato-.mu.-sulfido-ferrate(III)] and bis[p-tolylthiolato-.mu.-sulfido-ferrate(III)] dianionsJournal of the American Chemical Society, 1975