Fast-growth thermodynamic integration: Error and efficiency analysis
- 1 May 2001
- journal article
- Published by AIP Publishing in The Journal of Chemical Physics
- Vol. 114 (17) , 7330-7337
- https://doi.org/10.1063/1.1363668
Abstract
Equilibrium free energy differences can be calculated accurately from repeated fast-growth thermodynamic integration (TI) based on Jarzynski’s identity [Phys. Rev. Lett. 78, 2690 (1997)]. We derive expressions for the free energy differences. Error estimates allow us to quantify the relative efficiency of performing many fast-growth vs few slow-growth TIs for a given total computational cost. Fast-growth TI is illustrated through the calculation of the potential of mean force between two methane molecules and compared to umbrella sampling analyzed by using the weighted histogram analysis method. Fast-growth TI is well suited for parallel computer architectures, requiring only the simplest parallelism with repeated runs for different starting conditions.Keywords
This publication has 45 references indexed in Scilit:
- Hydration free energy of waterThe Journal of Physical Chemistry, 1995
- Free energy calculations: Applications to chemical and biochemical phenomenaChemical Reviews, 1993
- Computational AlchemyAnnual Review of Physical Chemistry, 1992
- Simple analysis of noise and hysteresis in (slow-growth) free energy simulationsThe Journal of Physical Chemistry, 1991
- Estimation of errors in free energy calculations due to the lag between the hamiltonian and the system configurationThe Journal of Physical Chemistry, 1991
- A Monte Carlo simulation of the hydrophobic interactionThe Journal of Chemical Physics, 1979
- Monte Carlo free energy estimates using non-Boltzmann sampling: Application to the sub-critical Lennard-Jones fluidChemical Physics Letters, 1974
- High-Temperature Equation of State by a Perturbation Method. I. Nonpolar GasesThe Journal of Chemical Physics, 1954
- Sur une propri t de la loi de GauMathematische Zeitschrift, 1939
- On the exchange interaction in magnetic crystalsPhysica, 1937