Sequence analysis of an aphid endosymbiont DNA fragment containingrpoB (β-subunit of RNA polymerase) and portions ofrplL andrpoC

Publisher Website
Google Scholar
Abstract
The aphidSchizaphis graminum is dependent on an association with a prokaryotic endosymbiont (Buchnera aphidicola). The nucleotide (nt) sequence of a 5040 base pair (bp) DNA fragment ofB. aphidicola, homologous to therplL-rpoB-rpoC portion of theEscherichia coli β-operon, was determined. The DNA coded for the terminal 35 amino acids of RplL (large ribosomal subunit protein L7/L12), the complete RpoB (β-subunit of RNA polymerase), and the first 209 amino acids of RpoC (β′-subunit of RNA polymerase). The deduced sequences ofB. aphidicola RplL, RpoB, and RpoC were 71, 84, and 91% identical, respectively, to the homologous proteins ofE. coli. The sequences of two portions of the intergenic region betweenrplL andrpoB were nearly identical in bothB. aphidicola andE. coli. One sequence constituted an inverted repeat that could be an RNase III-messenger RNA processing site; the other sequence preceded RpoB. A compilation of the codon usage for RpoB, RpoC, and otherB. apidicola proteins indicated a major preference for A or T in the first and third positions, a result consistent with the low guanine plus cytosine (G+C) content of the DNA of this organism.