The modelling of a primitive ‘sustainable’ conservative cell
- 15 June 2001
- journal article
- research article
- Published by The Royal Society in Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences
- Vol. 359 (1783) , 1055-1072
- https://doi.org/10.1098/rsta.2001.0821
Abstract
The simple sustainable or ‘eternal’ cell model, assuming preservation of all proteins, is designed as a building block, a primitive element upon which one can build more complete functional cell models of various types, representing various species. In the modelling we emphasize the electrophysiological aspects, in part because these are a well–developed component of cell models and because membrane potentials and their fluctuations have been generally omitted from metabolically oriented cell models in the past. Fluctuations in membrane potential deserve heightened consideration because probably all cells have negative intracellular potentials and most cells demonstrate electrical activity with vesicular extrusion, receptor occupancy, as well as with stimulated excitation resulting in regenerative depolarization. The emphasis is on the balances of mass, charge, and of chemical species while accounting for substrate uptake, metabolism and metabolite loss from the cell. By starting with a primitive representation we emphasize the conservation ideas. As more advanced models are generated they must adhere to the same basic principles as are required for the most primitive incomplete model.Keywords
This publication has 66 references indexed in Scilit:
- Network analysis of intermediary metabolism using linear optimization. I. Development of mathematical formalismPublished by Elsevier ,2006
- Assessment of the Metabolic Capabilities of Haemophilus influenzae Rd through a Genome-scale Pathway AnalysisJournal of Theoretical Biology, 2000
- Theory for the Systemic Definition of Metabolic Pathways and their use in Interpreting Metabolic Function from a Pathway-Oriented PerspectiveJournal of Theoretical Biology, 2000
- Chaos in multi-looped negative feedback systemsJournal of Theoretical Biology, 1990
- Metabolic dynamics in the human red cell. Part III—Metabolic reaction ratesJournal of Theoretical Biology, 1990
- Metabolic control theory and biochemical systems theory: Different objectives, different assumptions, different resultsJournal of Theoretical Biology, 1989
- Regulation of enzyme activity by cyclic phosphorylation-dephosphorylation cascadesBiochimica et Biophysica Acta (BBA) - Protein Structure and Molecular Enzymology, 1983
- ATP synthesis by the reverse of the sarcoplasmic calcium pumpFEBS Letters, 1971
- DPNH oscillations in a cell-free extract of S. carlsbergensisBiochemical and Biophysical Research Communications, 1964
- Oscillations of glycolytic intermediates in yeast cellsBiochemical and Biophysical Research Communications, 1964