Halococcus qingdaonensis sp. nov., a halophilic archaeon isolated from a crude sea-salt sample
Open Access
- 1 March 2007
- journal article
- Published by Microbiology Society in International Journal of Systematic and Evolutionary Microbiology
- Vol. 57 (3) , 600-604
- https://doi.org/10.1099/ijs.0.64673-0
Abstract
A Gram-negative, extremely halophilic, coccoid archaeal strain, CM5T, was isolated from a crude sea-salt sample collected near Qingdao, China. The organism grew optimally at 35–40 °C and pH 6.0 in the presence of 20 % (w/v) NaCl. Its colonies were red in colour and it could use glucose as a sole carbon source for growth. The 16S rRNA gene sequence of CM5Twas most closely related to those ofHalococcusspecies. Its pattern of antibiotic susceptibility was similar to those of other describedHalococcusspecies. Biochemical tests revealed no sign of H2S production or gelatin liquefaction. The main polar lipids of strain CM5Twere phosphatidylglycerol, phosphatidylglycerol methylphosphate and sulfated diglycosyl diether. No phosphatidylglycerol sulfate was present. The DNA G+C content of strain CM5Twas 61.2 mol% and it gave DNA–DNA reassociation values of 33.7, 57.1 and 29.6 %, respectively, withHalococcus salifodinaeDSM 8989T,Halococcus dombrowskiiDSM 14522TandHalococcus morrhuaeATCC 17082T. Based on its morphological and chemotaxonomic properties and phylogenetic analysis of 16S rRNA gene sequence data, we propose that CM5Tshould be classified within a novel species,Halococcus qingdaonensissp. nov., with strain CM5T(=CGMCC 1.4243T=JCM 13587T) as the type strain.Keywords
This publication has 26 references indexed in Scilit:
- Halococcus hamelinensis sp. nov., a novel halophilic archaeon isolated from stromatolites in Shark Bay, AustraliaInternational Journal of Systematic and Evolutionary Microbiology, 2006
- MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignmentBriefings in Bioinformatics, 2004
- MEGA2: molecular evolutionary genetics analysis softwareBioinformatics, 2001
- Halococcus salifodinae sp. nov., an Archaeal Isolate from an Austrian Salt MineInternational Journal of Systematic and Evolutionary Microbiology, 1994
- BASIC computer program for evaluation of spectroscopic DNA renaturation data from GILFORD SYSTEM 2600 spectrophotometer on a PC/XT/AT type personal computerJournal of Microbiological Methods, 1992
- Deoxyribonucleic acid reiatedness among species of Haloarcula and other halobacteriaBiochemistry and Cell Biology, 1990
- DNA-DNA homology studies among strains ofHaloferax and other halobacteriaCurrent Microbiology, 1989
- CONFIDENCE LIMITS ON PHYLOGENIES: AN APPROACH USING THE BOOTSTRAPEvolution, 1985
- Studies on the spectrophotometric determination of DNA hybridization from renaturation ratesSystematic and Applied Microbiology, 1983
- The Quantitative Measurement of DNA Hybridization from Renaturation RatesEuropean Journal of Biochemistry, 1970