ArrayCyGHt: a web application for analysis and visualization of array-CGH data

Open Access

3 March 2005

journal article
research article
Published by Oxford University Press (OUP) in Bioinformatics

Vol. 21 (10) , 2554-2555
https://doi.org/10.1093/bioinformatics/bti357

Abstract

Summary: ArrayCyGHt is a web-based application tool for analysis and visualization of microarray-comparative genomic hybridization (array-CGH) data. Full process of array-CGH data analysis, from normalization of raw data to the final visualization of copy number gain or loss, can be straightforwardly achieved on this arrayCyGHt system without the use of any further software. ArrayCyGHt, therefore, provides an easy and fast tool for the analysis of copy number aberrations in any kinds of data format. Availability: ArrayCyGHt can be accessed at http://genomics.catholic.ac.kr/arrayCGH/ Contact:yejun@catholic.ac.kr Supplementary information: Technical documentation is available. See http://genomics.catholic.ac.kr/arrayCGH/

Keywords

This publication has 6 references indexed in Scilit:

CGH-Explorer: a program for analysis of array-CGH data
Bioinformatics, 2004
Analysis of array CGH data: from signal ratio to gain and loss of DNA regions
Bioinformatics, 2004
Breakpoint identification and smoothing of array comparative genomic hybridization data
Bioinformatics, 2004
Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation
Nucleic Acids Research, 2002
Fully Automatic Quantification of Microarray Image Data
Genome Research, 2002
High resolution analysis of DNA copy number variation using comparative genomic hybridization to microarrays
Nature Genetics, 1998