NMR and circular dichroic studies on the solution conformation of a synthetic peptide derived from the calmodulin‐binding domain of Bordetella pertussis adenylate cyclase

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Abstract
The solution conformation of a synthetic peptide of 20 amino acids (P235–254) derived from the calmodulin‐binding domain of Bordetella pertussis adenylate cyclase was studied by proton two‐dimensional NMR spectroscopy and circular dichroism. Based on the standard techniques we have assigned all the resonances in the NMR spectrum to the corresponding protons of the peptide. Analysis of the secondary chemical shift distribution and of the nuclear Overhauser effect connectivities showed no evidence for a highly populated regular conformation but suggested the tendency to form an α‐helix arround the unique Trp residue. The propensity for a helical structure is in agreement with the results of circular dichroic spectroscopy showing a slight negative band at 222 nm which was cancelled by 6 M guanidine hydrochloride. Increasing amounts of 2,2,2‐trifluorethanol (up to 40%) increase considerably the helical population of the peptide as reflected in the circular dichroic spectra. Analysis of the present results shows that the free peptide P235–254 has the tendency to form a basic amphiphilic helix. The presence of two acid residues, Glu236 and Asp239, on the hydrophilic side of the α‐helix, which is mainly composed by basic residues, may explain the lower affinity of this peptide for calmodulin as compared with other peptides derived from calmodulin‐activated enzymes.