Conservation of RET Regulatory Function from Human to Zebrafish Without Sequence Similarity
- 14 April 2006
- journal article
- other
- Published by American Association for the Advancement of Science (AAAS) in Science
- Vol. 312 (5771) , 276-279
- https://doi.org/10.1126/science.1124070
Abstract
Evolutionary sequence conservation is an accepted criterion to identify noncoding regulatory sequences. We have used a transposon-based transgenic assay in zebrafish to evaluate noncoding sequences at the zebrafish ret locus, conserved among teleosts, and at the human RET locus, conserved among mammals. Most teleost sequences directed ret -specific reporter gene expression, with many displaying overlapping regulatory control. The majority of human RET noncoding sequences also directed ret -specific expression in zebrafish. Thus, vast amounts of functional sequence information may exist that would not be detected by sequence similarity approaches.Keywords
This publication has 27 references indexed in Scilit:
- Evaluation of the RET regulatory landscape reveals the biological relevance of a HSCR-implicated enhancerHuman Molecular Genetics, 2005
- Large-scale enhancer detection in the zebrafish genomeDevelopment, 2005
- In vivo characterization of a vertebrate ultraconserved enhancerGenomics, 2005
- A common sex-dependent mutation in a RET enhancer underlies Hirschsprung disease riskNature, 2005
- Functional Evolution of a cis-Regulatory ModulePLoS Biology, 2005
- Highly Conserved Non-Coding Sequences Are Associated with Vertebrate DevelopmentPLoS Biology, 2004
- Comparative genomics at the vertebrate extremesNature Reviews Genetics, 2004
- Ultraconserved Elements in the Human GenomeScience, 2004
- Comparative Genomics of the SOX9 Region in Human and Fugu rubripes: Conservation of Short Regulatory Sequence Elements within Large Intergenic RegionsGenomics, 2001
- Evidence for stabilizing selection in a eukaryotic enhancer elementNature, 2000