Amino acid distribution in protein secondary structures
- 1 April 1982
- journal article
- research article
- Published by Wiley in International Journal of Peptide and Protein Research
- Vol. 19 (4) , 380-393
- https://doi.org/10.1111/j.1399-3011.1982.tb02619.x
Abstract
The compositional distribution of the twenty amino acids was examined for particular positions within secondary structures (α-helices, β-strands, and turns) taken from a 44-protein sample. Correlation coefficients calculated between positional composition of the amino acids and various of their physico-chemical characteristics indicated considerable asymmetry in the properties of the residues comprising regions within and adjacent to secondary structures, modes of helix formation, physical parameters most sensitive to the buriedness of residues in β-strands, and posssible improvements in the accuracy of secondary structure prediction methodologies.Keywords
This publication has 29 references indexed in Scilit:
- SECONDARY STRUCTURE RELATIONS BETWEEN BETA‐LACTAMASES AND PENICILLIN‐SENSITIVE D—ALANINE—CARBOXYPEPTIDASESInternational Journal of Peptide and Protein Research, 1981
- Water, Protein Folding, and the Genetic CodeScience, 1979
- Conformational preferences of amino acids in globular proteinsBiochemistry, 1978
- Hydrophobic character of amino acid residues in globular proteinsNature, 1978
- β-turns in proteinsJournal of Molecular Biology, 1977
- Automatic identification of secondary structure in globular proteinsJournal of Molecular Biology, 1977
- The protein data bank: A computer-based archival file for macromolecular structuresJournal of Molecular Biology, 1977
- Amino acid properties and side-chain orientation in proteins: A cross correlation approachJournal of Theoretical Biology, 1975
- Structural and functional role of leucine residues in proteinsJournal of Molecular Biology, 1973
- Statistical analysis of the distribution of amino acid residues among helical and non-helical regions in globular proteinsJournal of Molecular Biology, 1969