Hawkeye: an interactive visual analytics tool for genome assemblies
Open Access
- 9 March 2007
- journal article
- Published by Springer Nature in Genome Biology
- Vol. 8 (3) , R34
- https://doi.org/10.1186/gb-2007-8-3-r34
Abstract
Genome sequencing remains an inexact science, and genome sequences can contain significant errors if they are not carefully examined. Hawkeye is our new visual analytics tool for genome assemblies, designed to aid in identifying and correcting assembly errors. Users can analyze all levels of an assembly along with summary statistics and assembly metrics, and are guided by a ranking component towards likely mis-assemblies. Hawkeye is freely available and released as part of the open source AMOS project http://amos.sourceforge.net/hawkeye.Keywords
This publication has 31 references indexed in Scilit:
- Genome sequencing in microfabricated high-density picolitre reactorsNature, 2005
- The Genome Assembly Archive: A New Public ResourcePLoS Biology, 2004
- Comparative genome assemblyBriefings in Bioinformatics, 2004
- Whole-Genome Sequence Assembly for Mammalian Genomes: Arachne 2Genome Research, 2003
- ARACHNE: a whole-genome shotgun assembler.2002
- The Sequence of the Human GenomeScience, 2001
- Initial sequencing and analysis of the human genomeNature, 2001
- A Whole-Genome Assembly of DrosophilaScience, 2000
- Whole-Genome Random Sequencing and Assembly of Haemophilus influenzae RdScience, 1995
- Nucleotide sequence of bacteriophage λ DNAJournal of Molecular Biology, 1982