Optimal protocol and trajectory visualization for conformational searches of peptides and proteins

This publication has 33 references indexed in Scilit:

• Tertiary templates for proteins: Use of packing criteria in the enumeration of allowed sequences for different structural classes
  Published by Elsevier ,2005
• Database algorithm for generating protein backbone and side-chain co-ordinates from a Cα trace: Application to model building and detection of co-ordinate errors
  Journal of Molecular Biology, 1991
• High directional Monte Carlo procedure coupled with the temperature heating and annealing as a method to obtain the global energy minimum structure of polypeptides and proteins
  Biopolymers, 1991
• The program FANTOM for energy refinement of polypeptides and proteins using a Newton – Raphson minimizer in torsion angle space
  Biopolymers, 1990
• A prediction of tertiary structures of peptide by the Monte Carlo simulated annealing method
  Protein Engineering, Design and Selection, 1989
• The multiple-minima problem in the conformational analysis of polypeptides. III. An Electrostatically Driven Monte Carlo Method: Tests on enkephalin
  Protein Journal, 1989
• Analysis of the relationship between side-chain conformation and secondary structure in globular proteins
  Journal of Molecular Biology, 1987
• An approach to the multiple-minima problem in protein folding by relaxing dimensionality
  Journal of Molecular Biology, 1987
• Solvation energy in protein folding and binding
  Nature, 1986
• Experimental simulation of the environment of the δ opioid receptor. A 500 MHz study of enkephalins in CDCl3
  Biochemical and Biophysical Research Communications, 1984