Theoretical studies of RNA catalysis: Hybrid QM/MM methods and their comparison with MD and QM
- 31 October 2009
- Vol. 49 (2) , 202-216
- https://doi.org/10.1016/j.ymeth.2009.04.007
Abstract
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This publication has 144 references indexed in Scilit:
- A repulsive field: advances in the electrostatics of the ion atmosphereCurrent Opinion in Chemical Biology, 2008
- Experimental analyses of the chemical dynamics of ribozyme catalysisCurrent Opinion in Chemical Biology, 2008
- Shared traits on the reaction coordinates of ribonuclease and an RNA enzymeBiochemical and Biophysical Research Communications, 2008
- Solvent Structure and Hammerhead Ribozyme CatalysisChemistry & Biology, 2008
- Molecular dynamics simulations and their application to four-stranded DNAMethods, 2007
- Ribozyme Catalysis Revisited: Is Water Involved?Molecular Cell, 2007
- RNA catalysis: ribozymes, ribosomes, and riboswitchesPublished by Elsevier ,2007
- Insight into the Role of Mg2+ in Hammerhead Ribozyme Catalysis from X-ray Crystallography and Molecular Dynamics SimulationJournal of Chemical Theory and Computation, 2007
- Molecular dynamics simulations of RNA: An in silico single molecule approachBiopolymers, 2006
- Empirical force fields for biological macromolecules: Overview and issuesJournal of Computational Chemistry, 2004