Free Energy Analysis of Protein–DNA Binding: The EcoRI Endonuclease–DNA Complex
- 1 May 1999
- journal article
- Published by Elsevier in Journal of Computational Physics
- Vol. 151 (1) , 333-357
- https://doi.org/10.1006/jcph.1998.6173
Abstract
No abstract availableKeywords
This publication has 74 references indexed in Scilit:
- The statistical-thermodynamic basis for computation of binding affinities: a critical reviewBiophysical Journal, 1997
- AMBER, a package of computer programs for applying molecular mechanics, normal mode analysis, molecular dynamics and free energy calculations to simulate the structural and energetic properties of moleculesComputer Physics Communications, 1995
- A Second Generation Force Field for the Simulation of Proteins, Nucleic Acids, and Organic MoleculesJournal of the American Chemical Society, 1995
- Salt Effects on Protein-DNA InteractionsJournal of Molecular Biology, 1994
- Salt Effects on Ligand-DNA BindingJournal of Molecular Biology, 1994
- Free energy calculations: Applications to chemical and biochemical phenomenaChemical Reviews, 1993
- Free energy from simulations: Current Opinion in Structural Biology 1991, 1 : 196–200Current Opinion in Structural Biology, 1991
- Computer Simulation of Molecular Dynamics: Methodology, Applications, and Perspectives in ChemistryAngewandte Chemie International Edition in English, 1990
- Free Energy Via Molecular Simulation: Applications to Chemical and Biomolecular SystemsAnnual Review of Biophysics, 1989
- Free energy calculations: a breakthrough for modeling organic chemistry in solutionAccounts of Chemical Research, 1989