Gene 32 protein, the single-stranded DNA binding protein from bacteriophage T4, is a zinc metalloprotein.
- 1 November 1986
- journal article
- research article
- Published by Proceedings of the National Academy of Sciences in Proceedings of the National Academy of Sciences
- Vol. 83 (22) , 8452-8456
- https://doi.org/10.1073/pnas.83.22.8452
Abstract
Gene 32 protein (g32P) isolated from bacteriophage T4-infected Escherichia coli and from an overproduction vector derived from the plasmid pKC30 contains 1 mol of tightly incorporated Zn(II) per mol of protein. A linear incorporation of three molar equivalents of p-hydroxymercuriphenylsulfonate (PMPS) results in a linear release of 1.1 mol of Zn(II) from the protein. Reversal of formation of the g32P-PMPS complex with thiol in the presence of EDTA results in a zinc-free apo-g32P. Cd(II) and Co(II) can be exchanged with the intrinsic Zn(II) ion. The Cd(II) protein shows a charge-transfer band at approximately 250 nm. The Co(II) protein shows a set of absorption bands typical of a tetrahedral Co(II) complex (epsilon max = 660 M-1 X cm-1 at 645 nm), and two intense charge-transfer bands are present at 355 nm (epsilon = 2,250 M-1 X cm-1) and 320 nm (epsilon = 3,175 M-1 X cm-1). These observations are consistent with three cysteines as ligands to the Zn(II) ion in g32P. Zn(II) g32P undergoes precise limited proteolysis by trypsin to produce the small fragments A and B and the core, g32P-(A + B). Under identical conditions, apo-g32P is hydrolyzed rapidly beyond the g32P-(A + B) stage to produce many proteolyzed fragments. Fluorescence quenching experiments show that at low protein concentration apo-g32P has markedly altered binding affinity for poly(dT) relative to native g32P. Three of the four cysteines of g32P are found in a tyrosine-rich sequence corresponding to residues 72-116 and implicated in DNA binding by 1H NMR investigations. Zn(II) appears to provide a conformational element contributing to DNA binding by coordinating the cysteine and possibly histidine side chains in the sequence -Cys-X3-His-X5-Cys-X2-Cys-, residues 77-90, located in the DNA binding domain of g32P.This publication has 32 references indexed in Scilit:
- Structural and functional differences between the two intrinsic zinc ions of Escherichia coli RNA polymeraseBiochemistry, 1986
- Proton NMR (500 MHz) identification of aromatic residues of gene 32 protein involved in DNA binding by use of protein containing perdeuterated aromatic residues and by site-directed mutagenesisBiochemistry, 1986
- Cooperative and noncooperative binding of protein ligands to nucleic acid lattices: experimental approaches to the determination of thermodynamic parametersBiochemistry, 1986
- Transcription by T7 RNA polymerase is not zinc-dependent and is abolished on amidomethylation of cysteine-347Biochemistry, 1986
- Conformation of the DNA undecamer 5′d(A-A-G-T-G-T-G-A-T-A-T) bound to the single-stranded DNA binding protein of Escherichia coli: A time-dependent transferred nuclear overhauser enhancement studyJournal of Molecular Biology, 1986
- Proton NMR (500 MHz) of gene 32 protein-oligonucleotide complexesBiochemistry, 1984
- Complete amino acid sequence of the nucleic acid‐binding protein of bovine leukemia virusFEBS Letters, 1983
- Double-resonance experiments at 500 MHz on gene-5 protein and its complex with octadeoxyriboadenylic acidBiochemistry, 1981
- Physical Chemical Studies of the Structure and Function of Dna Binding (Helix-Destabilizing) ProteinsCritical Reviews in Biochemistry, 1980
- Isolation and characterization of gene 5 protein of filamentous bacterial virusesJournal of Molecular Biology, 1972