Highly designable protein structures and inter-monomer interactions
- 24 July 1998
- journal article
- Published by IOP Publishing in Journal of Physics A: General Physics
- Vol. 31 (29) , 6141-6155
- https://doi.org/10.1088/0305-4470/31/29/006
Abstract
By exact computer enumeration and combinatorial methods, we have calculated the designability of proteins in a simple lattice hydrophobic-polar model for the protein folding problem. We show that if the strength of the non-additive part of the interaction potential becomes larger than a critical value, the degree of designability of structures will depend on the parameters of the potential. We also show that the existence of a unique ground state is highly sensitive to mutation in certain sites.Keywords
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