A chain of states method for investigating infrequent event processes occurring in multistate, multidimensional systems
- 15 February 1993
- journal article
- Published by AIP Publishing in The Journal of Chemical Physics
- Vol. 98 (4) , 3196-3212
- https://doi.org/10.1063/1.464093
Abstract
This paper describes novel numerical methods for constructing reaction paths and evaluating transition state theory (TST) rate constants for multidimensional, multistate systems. The reaction path is represented as a tethered, freely jointed chain of states with configuration specified by minimization of a function that is derived from the differential description of the path. The method is general and applicable to systems of arbitrary dimension and does not require a priori knowledge of the first-order saddle point, or the topology of the states. Also presented is a novel procedure for numerical determination of the TST rate constant. The procedure is based on Monte Carlo importance sampling using a tethered chain with links modeled as harmonic springs. The beads of the chain and the points at which links pierce the dividing surface separating states serve as biased sampling points for Monte Carlo numerical integration. The methods presented here are tested using the Muller potential surface. The application to problems involving transitions between clusters of states, i.e., macrostates, is discussed.Keywords
This publication has 23 references indexed in Scilit:
- Reaction paths and free energy profiles for conformational transitions: An internal coordinate approachThe Journal of Chemical Physics, 1991
- Reaction path study of helix formation in tetrapeptides: Effect of side chainsThe Journal of Chemical Physics, 1991
- Reaction path study of conformational transitions in flexible systems: Applications to peptidesThe Journal of Chemical Physics, 1990
- Self-avoiding walk between two fixed points as a tool to calculate reaction paths in large molecular systemsInternational Journal of Quantum Chemistry, 1990
- A new technique to calculate steepest descent paths in flexible polyatomic systemsThe Journal of Chemical Physics, 1990
- A method for determining reaction paths in large molecules: Application to myoglobinChemical Physics Letters, 1987
- The intrinsic reaction coordinate. An a b i n i t i o calculation for HNC→HCN and H−+CH4→CH4+H−The Journal of Chemical Physics, 1977
- Constituent analysis of the potential gradient along a reaction coordinate. Method and an application to methane + tritium reactionJournal of the American Chemical Society, 1975
- Range relaxation 2. Determination of a reaction coordinate over an energy surface of several dimensionsInternational Journal of Quantum Chemistry, 1969
- Symmetries of activated complexesTransactions of the Faraday Society, 1968