Origin of the Temperature Dependence of Isotope Effects in Enzymatic Reactions: The Case of Dihydrofolate Reductase
- 16 June 2007
- journal article
- research article
- Published by American Chemical Society (ACS) in The Journal of Physical Chemistry B
- Vol. 111 (27) , 7852-7861
- https://doi.org/10.1021/jp070938f
Abstract
The origin of the temperature dependence of kinetic isotope effects (KIEs) in enzyme reactions is a problem of general interest and a major challenge for computational chemistry. The present work simulates the nuclear quantum mechanical (NQM) effects and the corresponding KIE in dihydrofolate reductase (DHFR) and two of its mutants by using the empirical valence bond (EVB) and the quantum classical path (QCP) centroid path integral approach. Our simulations reproduce the overall observed trend while using a fully microscopic rather than a phenomenological picture and provide an interesting insight. It appears that the KIE increases when the distance between the donor and acceptor increases, in a somewhat counter intuitive way. The temperature dependence of the KIE appears to reflect mainly the temperature dependence of the distance between the donor and acceptor. This trend is also obtained from a simplified vibronic treatment, but as demonstrated here, the vibronic treatment is not valid at short and medium distances, where it is essential to use the path integral or other approaches capable of moving seamlessly from the adiabatic to the diabatic limits. It is pointed out that although the NQM effects do not contribute to catalysis in DHFR, the observed temperature dependence can be used to refine the potential of mean force for the donor and acceptor distance and its change due to distanced mutations.Keywords
This publication has 63 references indexed in Scilit:
- Coordinated effects of distal mutations on environmentally coupled tunneling in dihydrofolate reductaseProceedings of the National Academy of Sciences, 2006
- Transition state theory can be used in studies of enzyme catalysis: lessons from simulations of tunnelling and dynamical effects in lipoxygenase and other systemsPhilosophical Transactions Of The Royal Society B-Biological Sciences, 2006
- Nuclear quantum effects on an enzyme-catalyzed reaction with reaction path potential: Proton transfer in triosephosphate isomeraseThe Journal of Chemical Physics, 2006
- Effects of a Distal Mutation on Active Site ChemistryBiochemistry, 2006
- Through the Channel and around the Channel: Validating and Comparing Microscopic Approaches for the Evaluation of Free Energy Profiles for Ion Penetration through Ion ChannelsThe Journal of Physical Chemistry B, 2005
- Simulations of the Large Kinetic Isotope Effect and the Temperature Dependence of the Hydrogen Atom Transfer in LipoxygenaseJournal of the American Chemical Society, 2004
- Evidence for Environmentally Coupled Hydrogen Tunneling during Dihydrofolate Reductase CatalysisJournal of the American Chemical Society, 2003
- A quantized classical path approach for calculations of quantum mechanical rate constantsThe Journal of Physical Chemistry, 1993
- Simulations of quantum mechanical corrections for rate constants of hydride-transfer reactions in enzymes and solutionsThe Journal of Physical Chemistry, 1991
- Computation of the intensities of vibrational spectra of electronic bands in diatomic moleculesPhysica, 1951