GenBank
Top Cited Papers
Open Access
- 11 November 2013
- journal article
- research article
- Published by Oxford University Press (OUP) in Nucleic Acids Research
- Vol. 42 (D1) , D32-D37
- https://doi.org/10.1093/nar/gkt1030
Abstract
GenBank® is a comprehensive database that contains publicly available nucleotide sequences for over 280 000 formally described species. These sequences are obtained primarily through submissions from individual laboratories and batch submissions from large-scale sequencing projects, including whole-genome shotgun and environmental sampling projects. Most submissions are made using the web-based BankIt or standalone Sequin programs, and GenBank staff assign accession numbers upon data receipt. Daily data exchange with the European Nucleotide Archive and the DNA Data Bank of Japan ensures worldwide coverage. GenBank is accessible through the National Center for Biotechnology Information (NCBI) Entrez retrieval system, which integrates data from the major DNA and protein sequence databases along with taxonomy, genome, mapping, protein structure and domain information, and the biomedical journal literature via PubMed. BLAST provides sequence similarity searches of GenBank and other sequence databases. Complete bimonthly releases and daily updates of the GenBank database are available by FTP. To access GenBank and its related retrieval and analysis services, begin at the NCBI home page: www.ncbi.nlm.nih.gov.Keywords
This publication has 15 references indexed in Scilit:
- Database resources of the National Center for Biotechnology InformationNucleic Acids Research, 2014
- Facing growth in the European Nucleotide ArchiveNucleic Acids Research, 2012
- DDBJ new system and service refactoringNucleic Acids Research, 2012
- Database resources of the National Center for Biotechnology InformationNucleic Acids Research, 2012
- The NCBI Taxonomy databaseNucleic Acids Research, 2011
- BioProject and BioSample databases at NCBI: facilitating capture and organization of metadataNucleic Acids Research, 2011
- The sequence read archive: explosive growth of sequencing dataNucleic Acids Research, 2011
- NCBI BLAST: a better web interfaceNucleic Acids Research, 2008
- Submitting DNA Sequences to the DatabasesPublished by Wiley ,2001
- Gapped BLAST and PSI-BLAST: a new generation of protein database search programsNucleic Acids Research, 1997