TRANSFAC, TRRD and COMPEL: towards a federated database system on transcriptional regulation
- 1 January 1997
- journal article
- Published by Oxford University Press (OUP) in Nucleic Acids Research
- Vol. 25 (1) , 265-268
- https://doi.org/10.1093/nar/25.1.265
Abstract
Three databases that provide data on transcriptional regulation are described. TRANSFAC is a database on transcription factors and their DNA binding sites. TRRD (Transcription Regulatory Region Database) collects information about complete regulatory regions, their regulation properties and architecture. COMPEL comprises specific information on composite regulatory elements. Here, we describe the present status of these databases and the first steps towards their federation.Keywords
This publication has 14 references indexed in Scilit:
- TRANSFAC: a database on transcription factors and their DNA binding sitesNucleic Acids Research, 1996
- Scaffold/Matrix-Attached Regions: Structural Properties Creating Transcriptionally Active LociPublished by Elsevier ,1996
- A compilation of composite regulatory elements affecting gene transcription in vertebratesNucleic Acids Research, 1995
- HMGI(Y) and Sp1 in addition to NF-κB regulate transcription of the MGSA/GROα geneNucleic Acids Research, 1995
- Matlnd and Matlnspector: new fast and versatile tools for detection of consensus matches in nucleotide sequence dataNucleic Acids Research, 1995
- Cooperativity between two NF-kappa B complexes, mediated by high-mobility-group protein I(Y), is essential for cytokine-induced expression of the E-selectin promoter.Molecular and Cellular Biology, 1994
- Recognition of regulatory regions in genomic sequencesJournal of Biotechnology, 1994
- The High Mobility Group protein HMG I(Y) is required for NF-κB-dependent virus induction of the human IFN-β geneCell, 1992
- Compilation of transcription regulating proteinsNucleic Acids Research, 1988
- Compilation and analysis of eukaryotic POL II promoter sequencesNucleic Acids Research, 1986