On the combination of molecular replacement and single-wavelength anomalous diffraction phasing for automated structure determination
- 16 September 2009
- journal article
- research article
- Published by International Union of Crystallography (IUCr) in Acta Crystallographica Section D-Biological Crystallography
- Vol. 65 (10) , 1089-1097
- https://doi.org/10.1107/s0907444909029643
Abstract
A combination of molecular replacement and single-wavelength anomalous diffraction phasing has been incorporated into the automated structure-determination platform Auto-Rickshaw. The complete MRSAD procedure includes molecular replacement, model refinement, experimental phasing, phase improvement and automated model building. The improvement over the standard SAD or MR approaches is illustrated by ten test cases taken from the JCSG diffraction data-set database. Poor MR or SAD phases with phase errors larger than 70 degrees can be improved using the described procedure and a large fraction of the model can be determined in a purely automatic manner from X-ray data extending to better than 2.6 A resolution.Keywords
This publication has 41 references indexed in Scilit:
- BALBES: a molecular-replacement pipelineActa Crystallographica Section D-Biological Crystallography, 2007
- OASISand molecular-replacement model completionActa Crystallographica Section D-Biological Crystallography, 2007
- Automated search-model discovery and preparation for structure solution by molecular replacementActa Crystallographica Section D-Biological Crystallography, 2007
- Crystal structures of a phosphotransacetylase from Bacillus subtilis and its complex with acetyl phosphateJournal of Structural and Functional Genomics, 2005
- SGXPro: a parallel workflow engine enabling optimization of program performance and automation of structure determinationActa Crystallographica Section D-Biological Crystallography, 2005
- MRSAD: using anomalous dispersion from S atoms collected at Cu Kα wavelength in molecular-replacement structure determinationActa Crystallographica Section D-Biological Crystallography, 2003
- Automation of the collection and processing of X-ray diffraction data – a generic approachActa Crystallographica Section D-Biological Crystallography, 2002
- General quadratic functions in real and reciprocal space and their application to likelihood phasingActa Crystallographica Section D-Biological Crystallography, 2000
- Evolutionary transition pathways for changing peptide ligand specificity and structureThe EMBO Journal, 2000
- The Protein Data BankNucleic Acids Research, 2000