The selection and analysis of mutants of the CO2-concentrating mechanism in cyanobacteria have greatly advanced our understanding of the physiological and genetic components of this mechanism. This paper reviews the processes for the creation of mutants and the properties of mutants that have been produced so far. In addition to this, consideration is given to developing new mutant selection protocols, based on our current knowledge of the operation of the CO2-concentrating mechanism. As a result, new screens are suggested for the isolation of transport mutants that are defective in either HCO3− or CO2 transport activity, and putative carboxysomal mutants that have altered carbonic anhydrase activities. The procedures for physiological analysis of mutants are also reviewed, with a conclusion that there is a great need for the further development of in vitro assays, particularly for the inorganic carbon transport process and carboxysome function. Particular consideration is given to the in vitro carboxysome assay, and it is concluded that many of the properties of a carboxysomal Rubisco may be difficult to resolve owing to increases in carboxysomal leakiness during isolation and the higher ratio of [CO2] to [HCO3−] experienced during assays compared with the in vitro situation. Finally, consideration is given to the genetic analysis of cyanobacterial mutants and the progress that will need to be made in the future, discovering what are the functions of the proteins coded for by the genes that are isolated. Key words: cyanobacteria, mutants, photosynthesis, carboxysome, CO2-concentrating mechanism.