A Recently Active Miniature Inverted-Repeat Transposable Element, Chunjie, Inserted Into an Operon Without Disturbing the Operon Structure in Geobacter uraniireducens Rf4
- 1 August 2008
- journal article
- Published by Oxford University Press (OUP) in Genetics
- Vol. 179 (4) , 2291-2297
- https://doi.org/10.1534/genetics.108.089995
Abstract
Miniature inverted-repeat transposable elements (MITEs) are short DNA transposons with terminal inverted repeat (TIR) signals and have been extensively studied in plants and other eukaryotes. But little is known about them in eubacteria. We identified a novel and recently active MITE, Chunjie, when studying the recent duplication of an operon consisting of ABC transporters and a phosphate uptake regulator in the chromosome of Geobacter uraniireducens Rf4. Chunjie resembles the other known MITEs in many aspects, e.g., having TIR signals and direct repeats, small in size, noncoding, able to fold into a stable secondary structure, and typically inserted into A + T-rich regions. At least one case of recent transposition was observed, i.e., the insertion of Chunjie into one copy of the aforementioned operon. As far as we know, this is the first report that the insertion of a MITE does not disrupt the operon structure.This publication has 32 references indexed in Scilit:
- Nezha, a novel active miniature inverted-repeat transposable element in cyanobacteriaBiochemical and Biophysical Research Communications, 2008
- Insertion Sequences show diverse recent activities in Cyanobacteria and ArchaeaBMC Genomics, 2008
- Transposition of the rice miniature inverted repeat transposable element mPing in Arabidopsis thalianaProceedings of the National Academy of Sciences, 2007
- The RNAz web server: prediction of thermodynamically stable and evolutionarily conserved RNA structuresNucleic Acids Research, 2007
- Insertion Sequence Diversity in ArchaeaMicrobiology and Molecular Biology Reviews, 2007
- Identifying bacterial genes and endosymbiont DNA with GlimmerBioinformatics, 2007
- A miniature insertion element transposable in Microcystis sp. FACHB 854*Progress in Natural Science: Materials International, 2006
- Repbase Update, a database of eukaryotic repetitive elementsCytogenetic and Genome Research, 2005
- Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structureJournal of Molecular Biology, 1999
- CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choiceNucleic Acids Research, 1994