Anisotropic bead models for molecular hydrodynamics
- 15 May 1989
- journal article
- Published by AIP Publishing in The Journal of Chemical Physics
- Vol. 90 (10) , 5729-5734
- https://doi.org/10.1063/1.456429
Abstract
Some qualitative effects of slip hydrodynamic boundary conditions can be incorporated into bead models by replacing the scalar friction constant of a bead with a friction tensor. Translational and rotational diffusion coefficients are calculated analytically and exactly for polygons, analytically but approximately for spherical shells, and numerically by the method of Bloomfield and de la Torre. The calculated diffusion constants of benzene agree with experiment; such agreement is not possible using scalar friction constants. Some comments are made about the transition from overall slip to stick hydrodynamic behavior when tensor friction constants are used.Keywords
This publication has 17 references indexed in Scilit:
- A simulation based model of NMR T1 relaxation in lipid bilayer vesiclesThe Journal of Chemical Physics, 1988
- Brownian dynamics simulation of a lipid chain in a membrane bilayerThe Journal of Chemical Physics, 1988
- Langevin modes of macromoleculesThe Journal of Chemical Physics, 1986
- Active site dynamics in protein molecules: A stochastic boundary molecular‐dynamics approachBiopolymers, 1985
- Algorithms for brownian dynamicsMolecular Physics, 1982
- NMR relaxation parameters in molecules with internal motion: exact Langevin trajectory results compared with simplified relaxation modelsJournal of the American Chemical Society, 1981
- Hydrodynamic properties of complex, rigid, biological macromolecules: theory and applicationsQuarterly Reviews of Biophysics, 1981
- Helix–coil transitions in a simple polypeptide modelBiopolymers, 1980
- Calculations of the Diffusion Coefficients of n-AlkanesThe Journal of Chemical Physics, 1968
- The Intrinsic Viscosities and Diffusion Constants of Flexible Macromolecules in SolutionThe Journal of Chemical Physics, 1948