The X‐ray structure of a chitinase from the pathogenic fungus Coccidioides immitis
Open Access
- 1 January 2000
- journal article
- Published by Wiley in Protein Science
- Vol. 9 (3) , 544-551
- https://doi.org/10.1110/ps.9.3.544
Abstract
The X‐ray structure of chitinase from the fungal pathogen Coccidioides immitis has been solved to 2.2 Å resolution. Like other members of the class 18 hydrolase family, this 427 residue protein is an eight‐stranded β/α‐barrel. Although lacking an N‐terminal chitin anchoring domain, the enzyme closely resembles the chitinase from Serratia marcescens. Among the conserved features are three cis peptide bonds, all involving conserved active site residues. The active site is formed from conserved residues such as tryptophans 47, 131, 315, 378, tyrosines 239 and 293, and arginines 52 and 295. Glu171 is the catalytic acid in the hydrolytic mechanism; it was mutated to a Gln, and activity was abolished. Allosamidin is a substrate analog that strongly inhibits the class 18 enzymes. Its binding to the chitinase hevamine has been observed, and we used conserved structural features of the two enzymes to predict the inhibitors binding to the fungal enzyme.Keywords
This publication has 44 references indexed in Scilit:
- Substrate assistance in the mechanism of family 18 chitinases: theoretical studies of potential intermediates and inhibitors 1 1Edited by B. HonigJournal of Molecular Biology, 1998
- A procedure compatible withX-PLORfor the calculation of electron-density maps weighted using anR-free-likelihood approachJournal of Applied Crystallography, 1996
- The 1.8 Å Resolution Structure of Hevamine, a Plant Chitinase/Lysozyme, and Analysis of the Conserved Sequence and Structure Motifs of Glycosyl Hydrolase Family 18Journal of Molecular Biology, 1996
- R-free likelihood-based estimates of errors for phases calculated from atomic modelsActa Crystallographica Section A Foundations of Crystallography, 1995
- The refined crystal structure of an endochitinasefrom Hordeum vulgare L. seeds at 1.8 Å resolutionJournal of Molecular Biology, 1995
- The CCP4 suite: programs for protein crystallographyActa Crystallographica Section D-Biological Crystallography, 1994
- Stereochemical course of the hydrolysis reaction catalyzed by chitinases Al and D from Bacillus circulans WL‐12FEBS Letters, 1994
- Chemical modification studies of the active centre of Candida albicans chitinase and its inhibition by allosamidinJournal of General Microbiology, 1992
- Primary structure of a chitinase-encoding gene (chi1) from the filamentous fungus Aphanocladium album: similarity to bacterial chitinasesGene, 1992
- Extension of molecular replacement: a new search strategy based on Patterson correlation refinementActa Crystallographica Section A Foundations of Crystallography, 1990