Automatic annotation of organellar genomes with DOGMA
Top Cited Papers
Open Access
- 4 June 2004
- journal article
- research article
- Published by Oxford University Press (OUP) in Bioinformatics
- Vol. 20 (17) , 3252-3255
- https://doi.org/10.1093/bioinformatics/bth352
Abstract
Summary: The Dual Organellar GenoMe Annotator (DOGMA) automates the annotation of organellar (plant chloroplast and animal mitochondrial) genomes. It is a Web-based package that allows the use of BLAST searches against a custom database, and conservation of basepairing in the secondary structure of animal mitochondrial tRNAs to identify and annotate genes. DOGMA provides a graphical user interface for viewing and editing annotations. Annotations are stored on our password-protected server to enable repeated sessions of working on the same genome. Finished annotations can be extracted for direct submission to GenBank. Availability:http://phylocluster.biosci.utexas.edu/dogma/ Supplementary information: Detailed documentation and tutorials for annotating both animal mitochondrial and plant chloroplast genomes can be found on the DOGMA home page.Keywords
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