DPTF: a database of poplar transcription factors
Open Access
- 28 March 2007
- journal article
- research article
- Published by Oxford University Press (OUP) in Bioinformatics
- Vol. 23 (10) , 1307-1308
- https://doi.org/10.1093/bioinformatics/btm113
Abstract
Summary: The database of poplar transcription factors (DPTF) is a plant transcription factor (TF) database containing 2576 putative poplar TFs distributed in 64 families. These TFs were identified from both computational prediction and manual curation. We have provided extensive annotations including sequence features, functional domains, GO assignment and expression evidence for all TFs. In addition, DPTF contains cross-links to the Arabidopsis and rice transcription factor databases making it a unique resource for genome-scale comparative studies of transcriptional regulation in model plants. Availiability: DPTF is available at http://dptf.cbi.pku.edu.cn Contact:dptf@mail.cbi.pku.edu.cnKeywords
This publication has 12 references indexed in Scilit:
- The Genome of Black Cottonwood, Populus trichocarpa (Torr. & Gray)Science, 2006
- DRTF: a database of rice transcription factorsBioinformatics, 2006
- The Universal Protein Resource (UniProt): an expanding universe of protein informationNucleic Acids Research, 2006
- TRANSFAC(R) and its module TRANSCompel(R): transcriptional gene regulation in eukaryotesNucleic Acids Research, 2006
- EMBL Nucleotide Sequence Database: developments in 2005Nucleic Acids Research, 2006
- PupasView: a visual tool for selecting suitable SNPs, with putative pathological effect in genes, for genotyping purposesNucleic Acids Research, 2005
- InterProScan: protein domains identifierNucleic Acids Research, 2005
- DATF: a database of Arabidopsis transcription factorsBioinformatics, 2005
- NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteinsNucleic Acids Research, 2004
- A transcriptional roadmap to wood formationProceedings of the National Academy of Sciences, 2001