A study of collective atomic fluctuations and cooperativity in the U1A–RNA complex based on molecular dynamics simulations
- 10 November 2006
- journal article
- Published by Elsevier in Journal of Structural Biology
- Vol. 157 (3) , 500-513
- https://doi.org/10.1016/j.jsb.2006.10.022
Abstract
No abstract availableKeywords
This publication has 97 references indexed in Scilit:
- Comparison of multiple Amber force fields and development of improved protein backbone parametersProteins-Structure Function and Bioinformatics, 2006
- Do Collective Atomic Fluctuations Account for Cooperative Effects? Molecular Dynamics Studies of the U1A−RNA ComplexJournal of the American Chemical Society, 2006
- Cis/trans isomerization in HIV‐1 capsid protein catalyzed by cyclophilin A: Insights from computational and theoretical studiesProteins-Structure Function and Bioinformatics, 2004
- Using PC clusters to evaluate the transferability of molecular mechanics force fields for proteinsJournal of Computational Chemistry, 2002
- Molecular dynamics simulations of biomoleculesNature Structural & Molecular Biology, 2002
- The Protein Data BankNucleic Acids Research, 2000
- Comment on a “Fluctuation and Cross Correlation Analysis of Protein Motions Observed in Nanosecond Molecular Dynamics Simulations”Journal of Molecular Biology, 1996
- VMD: Visual molecular dynamicsJournal of Molecular Graphics, 1996
- AMBER, a package of computer programs for applying molecular mechanics, normal mode analysis, molecular dynamics and free energy calculations to simulate the structural and energetic properties of moleculesComputer Physics Communications, 1995
- Comparison of simple potential functions for simulating liquid waterThe Journal of Chemical Physics, 1983