Dual Substrate and Reaction Specificity in Mouse Serine Racemase: Identification of High-Affinity Dicarboxylate Substrate and Inhibitors and Analysis of the β-Eliminase Activity

Publisher Website
Google Scholar
Abstract
Mouse serine racemase (mSR) is a pyridoxal 5‘-phosphate dependent enzyme that catalyzes the biosynthesis of the N-methyl-d-aspartate receptor coagonist d-serine in the brain. Furthermore, mSR catalyzes β-elimination of serine and l-serine-O-sulfate into pyruvate. The biological significance of this β-elimination activity and the factors influencing mSR substrate and reaction specificity, which are crucial for prospective inhibitor design, are poorly understood. Using a bacterial expression system and ATP−agarose affinity chromatography, we have generated a pure and active recombinant mSR and investigated its substrate and reaction specificity in vitro by analyzing a systematic series of compounds derived from l-Ser and l-serine-O-sulfate. The analysis revealed several competitive inhibitors of serine racemization including glycine (KI = 1.63 mM), several dicarboxylic acids including malonate (KI = 0.077 mM), and l-erythro-3-hydroxyaspartate (KI = 0.049 mM). The latter compound represents the most effective inhibitor of SR reported to date. A simple inversion of the β-carbon configuration of the compound yields an excellent β-elimination substrate l-threo-3-hydroxyaspartate. Inhibition analysis indicates that racemization and β-elimination activities of mSR reside at the same active site. While the racemization activity is specific to serine, the β-elimination activity has a broader specificity for l-amino acids with a suitable leaving group at the β-carbon and optimal spatial orientation of the α-carboxyl and leaving groups. The possible implications of our observations for inhibitor design, regulation of activity, and function of mSR are discussed.