GeneSplicer: a new computational method for splice site prediction
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Open Access
- 1 March 2001
- journal article
- research article
- Published by Oxford University Press (OUP) in Nucleic Acids Research
- Vol. 29 (5) , 1185-1190
- https://doi.org/10.1093/nar/29.5.1185
Abstract
GeneSplicer is a new, flexible system for detecting splice sites in the genomic DNA of various eukaryotes. The system has been tested successfully using DNA from two reference organisms: the model plant Arabidopsis thaliana and human. It was compared to six programs representing the leading splice site detectors for each of these species: NetPlantGene, NetGene2, HSPL, NNSplice, GENIO and SpliceView. In each case GeneSplicer performed comparably to the best alternative, in terms of both accuracy and computational efficiency.Keywords
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