ArrayExpress--a public database of microarray experiments and gene expression profiles
Top Cited Papers
Open Access
- 28 November 2006
- journal article
- research article
- Published by Oxford University Press (OUP) in Nucleic Acids Research
- Vol. 35 (Database) , D747-D750
- https://doi.org/10.1093/nar/gkl995
Abstract
ArrayExpress is a public database for high throughput functional genomics data. ArrayExpress consists of two parts—the ArrayExpress Repository, which is a MIAME supportive public archive of microarray data, and the ArrayExpress Data Warehouse, which is a database of gene expression profiles selected from the repository and consistently re-annotated. Archived experiments can be queried by experiment attributes, such as keywords, species, array platform, authors, journals or accession numbers. Gene expression profiles can be queried by gene names and properties, such as Gene Ontology terms and gene expression profiles can be visualized. ArrayExpress is a rapidly growing database, currently it contains data from >50 000 hybridizations and >1 500 000 individual expression profiles. ArrayExpress supports community standards, including MIAME, MAGE-ML and more recently the proposal for a spreadsheet based data exchange format: MAGE-TAB. Availability: Author Webpage.Keywords
This publication has 11 references indexed in Scilit:
- A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TABBMC Bioinformatics, 2006
- ArrayExpress service for reviewers/editors of DNA microarray papersNature Biotechnology, 2006
- Taverna: a tool for building and running workflows of servicesNucleic Acids Research, 2006
- The Universal Protein Resource (UniProt): an expanding universe of protein informationNucleic Acids Research, 2006
- Ensembl 2006Nucleic Acids Research, 2006
- ArrayExpress--a public repository for microarray gene expression data at the EBINucleic Acids Research, 2004
- Expression Profiler: next generation--an online platform for analysis of microarray dataNucleic Acids Research, 2004
- CIBEX: Center for Information Biology gene EXpression databaseComptes Rendus Biologies, 2003
- Gene Expression Omnibus: NCBI gene expression and hybridization array data repositoryNucleic Acids Research, 2002
- Minimum information about a microarray experiment (MIAME)—toward standards for microarray dataNature Genetics, 2001