genotypeandgenodive: two programs for the analysis of genetic diversity of asexual organisms
Top Cited Papers
- 20 September 2004
- journal article
- Published by Wiley in Molecular Ecology Notes
- Vol. 4 (4) , 792-794
- https://doi.org/10.1111/j.1471-8286.2004.00770.x
Abstract
Investigating diversity in asexual organisms using molecular markers involves the assignment of individuals to clonal lineages and the subsequent analysis of clonal diversity. Assignment is possible using a distance matrix in combination with a user‐specified threshold, defined as the maximum distance between two individuals that are considered to belong to the same clonal lineage. Analysis of clonal diversity requires tests for differences in diversity and clonal composition between populations. We developed two programs,genotypeandgenodivefor such analyses of clonal diversity in asexually reproducing organisms. Additionally,genotypecan be used for detecting genotyping errors in studies of sexual organisms.Keywords
This publication has 10 references indexed in Scilit:
- Refugia, differentiation and postglacial migration in arctic‐alpine Eurasia, exemplified by the mountain avens (Dryas octopetala L.)Molecular Ecology, 2006
- api‐calc 1.0: a computer program for calculating the average probability of identity allowing for substructure, inbreeding and the presence of close relativesMolecular Ecology Notes, 2004
- Genetic structure of a population sample of apomictic dandelionsHeredity, 2003
- mlgsim: a program for detecting clones using a simulation approachMolecular Ecology Notes, 2003
- Intra-clonal variation and a similarity threshold for identification of clones: application to Salix exigua using AFLP molecular markersTheoretical and Applied Genetics, 2003
- gimlet: a computer program for analysing genetic individual identification dataMolecular Ecology Notes, 2002
- Genetic variation across VNTR loci in central North American Taraxacum surveyed at different spatial scalesPlant Ecology, 2002
- FSTAT (Version 1.2): A Computer Program to Calculate F-StatisticsJournal of Heredity, 1995
- Randomization and Monte Carlo Methods in BiologyPublished by Springer Nature ,1991
- Molecular Evolutionary GeneticsPublished by Columbia University Press ,1987