Dynamic simulations of 13 TATA variants refine kinetic hypotheses of sequence/activity relationships
- 11 May 2001
- journal article
- Published by Elsevier in Journal of Molecular Biology
- Vol. 308 (4) , 681-703
- https://doi.org/10.1006/jmbi.2001.4617
Abstract
No abstract availableKeywords
This publication has 86 references indexed in Scilit:
- 1 Å crystal structures of B -DNA reveal sequence-specific binding and groove-specific bending of DNA by magnesium and calcium 1 1Edited by I. TinocoJournal of Molecular Biology, 2000
- Intermediate species possessing bent DNA are present along the pathway to formation of a final TBP-TATA complexJournal of Molecular Biology, 1999
- Localization of ammonium ions in the minor groove of DNA duplexes in solution and the origin of DNA A-tract bending 1 1Edited by I. TinocoJournal of Molecular Biology, 1999
- Affinity, stability and polarity of binding of the TATA binding protein governed by flexure at the TATA box 1 1Edited by P. E. WrightJournal of Molecular Biology, 1998
- Use of a 3D structure data base for understanding sequence-dependent conformational aspects of DNAJournal of Molecular Biology, 1997
- How Proteins Recognize the TATA BoxJournal of Molecular Biology, 1996
- Crystal structure of a TFIIB–TBP–TATA-element ternary complexNature, 1995
- Crystal structure of a yeast TBP/TATA-box complexNature, 1993
- Filtering molecular dynamics trajectories to reveal low-frequency collective motions: Phospholipase A2Journal of Molecular Biology, 1989
- CHARMM: A program for macromolecular energy, minimization, and dynamics calculationsJournal of Computational Chemistry, 1983