Electron Transfer between the Quinones in the Photosynthetic Reaction Center and Its Coupling to Conformational Changes
- 1 August 2000
- journal article
- research article
- Published by American Chemical Society (ACS) in Biochemistry
- Vol. 39 (34) , 10487-10496
- https://doi.org/10.1021/bi000413c
Abstract
The electron transfer between the two quinones QA and QB in the bacterial photosynthetic reaction center (bRC) is coupled to a conformational rearrangement. Recently, the X-ray structures of the dark-adapted and light-exposed bRC from Rhodobacter sphaeroides were solved, and the conformational changes were characterized structurally. We computed the reaction free energy for the electron transfer from to QB in the X-ray structures of the dark-adapted and light-exposed bRC from Rb. sphaeroides. The computation was done by applying an electrostatic model using the Poisson−Boltzmann equation and Monte Carlo sampling. We accounted for possible protonation changes of titratable groups upon electron transfer. According to our calculations, the reaction energy of the electron transfer from to QB is +157 meV for the dark-adapted and −56 meV for the light-exposed X-ray structure; i.e., the electron transfer is energetically uphill for the dark-adapted structure and downhill for the light-exposed structure. A common interpretation of experimental results is that the electron transfer between and QB is either gated or at least influenced by a conformational rearrangement: A conformation in which the electron transfer from to QB is inactive, identified with the dark-adapted X-ray structure, changes into an electron-transfer active conformation, identified with the light-exposed X-ray structure. This interpretation agrees with our computational results if one assumes that the positive reaction energy for the dark-adapted X-ray structure effectively prevents the electron transfer. We found that the strongly coupled pair of titratable groups Glu-L212 and Asp-L213 binds about one proton in the dark-adapted X-ray structure, where the electron is mainly localized at QA, and about two protons in the light-exposed structure, where the electron is mainly localized at QB. This finding agrees with recent experimental and theoretical studies. We compare the present results for the bRC from Rb. sphaeroides to our recent studies on the bRC from Rhodopseudomonas viridis. We discuss possible mechanisms for the gated electron transfer from to QB and relate them to theoretical and experimental results.Keywords
This publication has 29 references indexed in Scilit:
- Amino Acid Protonation States Determine Binding Sites of the Secondary Ubiquinone and Its Anion in the Rhodobacter sphaeroides Photosynthetic Reaction CenterThe Journal of Physical Chemistry B, 1999
- Microscopic and semimacroscopic redox calculations: what can and cannot be learned from continuum modelsJBIC Journal of Biological Inorganic Chemistry, 1997
- Computational Simulation and Analysis of Dynamic Association between Plastocyanin and Cytochromef. Consequences for the Electron-Transfer ReactionJournal of the American Chemical Society, 1997
- Electrostatic Potentials inRhodopseudomonas viridisReaction Centers: Implications for the Driving Force and Directionality of Electron TransferThe Journal of Physical Chemistry, 1996
- Electrostatic calculations of amino acid titration and electron transfer, Q-AQB-->QAQ-B, in the reaction centerBiophysical Journal, 1995
- Structure of the photochemical reaction centre of a spheroidene-containing purple-bacterium,Rhodobacter sphaeroidesY, at 3 Å resolutionActa Crystallographica Section D-Biological Crystallography, 1995
- Crystallographic refinement at 2.3 Å Resolution and Refined Model of the Photosynthetic Reaction Centre fromRhodopseudomonas viridisJournal of Molecular Biology, 1995
- Electrostatic calculations of the pKa values of ionizable groups in bacteriorhodopsinJournal of Molecular Biology, 1992
- CHARMM: A program for macromolecular energy, minimization, and dynamics calculationsJournal of Computational Chemistry, 1983
- Redox equilibrium in the acceptor quinone complex of isolated reaction centers and the mode of action of O -phenanthrolineFEBS Letters, 1980