Atomic structure reveals the unique capsid organization of a dsRNA virus
- 17 March 2009
- journal article
- research article
- Published by Proceedings of the National Academy of Sciences in Proceedings of the National Academy of Sciences
- Vol. 106 (11) , 4225-4230
- https://doi.org/10.1073/pnas.0812071106
Abstract
For most dsRNA viruses, the genome-enclosing capsid comprises 120 copies of a single capsid protein (CP) organized into 60 icosahedrally equivalent dimers, generally identified as 2 nonsymmetricallyinteracting CP molecules with extensive lateral contacts. The crystal structure of a partitivirus, Penicillium stoloniferum virus F (PsV-F), reveals a different organization, in which the CP dimer is related by almost-perfect local 2-fold symmetry, forms prominent surface arches, and includes extensive structure swapping between the 2 subunits. An electron cryomicroscopy map of PsV-F shows that the disordered N terminus of each CP molecule interacts with the dsRNA genome and probably participates in its packaging or transcription. Intact PsV-F particles mediate semiconservative transcription, and transcripts are likely to exit through negatively charged channels at the icosahedral 5-fold axes. Other findings suggest that the PsV-F capsid is assembled from dimers of CP dimers, with an arrangement similar to flavivirus E glycoproteins.Keywords
This publication has 42 references indexed in Scilit:
- Partitivirus Structure Reveals a 120-Subunit, Helix-Rich Capsid with Distinctive Surface Arches Formed by Quasisymmetric Coat-Protein DimersStructure, 2008
- 3.88 Å structure of cytoplasmic polyhedrosis virus by cryo-electron microscopyNature, 2008
- AUTO3DEM—an automated and high throughput program for image reconstruction of icosahedral particlesJournal of Structural Biology, 2006
- Ab initio random model method facilitates 3D reconstruction of icosahedral particlesJournal of Structural Biology, 2006
- Fourier shell correlation threshold criteriaPublished by Elsevier ,2005
- The Birnavirus Crystal Structure Reveals Structural Relationships among Icosahedral VirusesPublished by Elsevier ,2005
- RNA Synthesis in a Cage—Structural Studies of Reovirus Polymerase λ3Cell, 2002
- [20] Processing of X-ray diffraction data collected in oscillation modePublished by Elsevier ,1997
- The CCP4 suite: programs for protein crystallographyActa Crystallographica Section D-Biological Crystallography, 1994
- Semi-conservative replication of double-stranded RNA by a virion-associated RNA polymeraseBiochemical and Biophysical Research Communications, 1978