Protein surface hydration mapped by site-specific mutations
Open Access
- 19 September 2006
- journal article
- research article
- Published by Proceedings of the National Academy of Sciences in Proceedings of the National Academy of Sciences
- Vol. 103 (38) , 13979-13984
- https://doi.org/10.1073/pnas.0606235103
Abstract
Water motion at protein surfaces is fundamental to protein structure, stability, dynamics, and function. By using intrinsic tryptophans as local optical probes, and with femtosecond resolution, it is possible to probe surface-water motions in the hydration layer. Here, we report our studies of local hydration dynamics at the surface of the enzyme Staphylococcus nuclease using site-specific mutations. From these studies of the WT and four related mutants, which change local charge distribution and structure, we are able to ascertain the contribution to solvation by protein side chains as relatively insignificant. We determined the time scales of hydration to be 3–5 ps and 100–150 ps. The former is the result of local librational/rotational motions of water near the surface; the latter is a direct measure of surface hydration assisted by fluctuations of the protein. Experimentally, these hydration dynamics of the WT and the four mutants are also consistent with results of the total dynamic Stokes shifts and fluorescence emission maxima and are correlated with their local charge distribution and structure. We discuss the role of protein fluctuation on the time scale of labile hydration and suggest reexamination of recent molecular dynamics simulations.Keywords
This publication has 45 references indexed in Scilit:
- Elucidation of information encoded in tryptophan 140 of staphylococcal nucleaseProteins-Structure Function and Bioinformatics, 2004
- Molecular Dynamics Simulations of Staphylococcal Nuclease: Properties of Water at the Protein SurfaceThe Journal of Physical Chemistry B, 2004
- Femtosecond Dynamics of DNA Photolyase: Energy Transfer of Antenna Initiation and Electron Transfer of Cofactor ReductionThe Journal of Physical Chemistry B, 2004
- Dynamics of Ordered Water in Interfacial Enzyme Recognition: Bovine Pancreatic Phospholipase A2Angewandte Chemie International Edition in English, 2003
- Dynamics of Water near a Protein SurfaceThe Journal of Physical Chemistry B, 2003
- Coupling between trans/cis proline isomerization and protein stability in staphylococcal nucleaseProtein Science, 1996
- NMR studies of the hydration of biological macromoleculesFaraday Discussions, 1996
- Energetic contribution of side chain hydrogen bonding to the stability of staphylococcal nucleaseBiochemistry, 1995
- Protein Hydration Dynamics in Aqueous Solution: A Comparison of Bovine Pancreatic Trypsin Inhibitor and Ubiquitin by Oxygen-17 Spin Relaxation DispersionJournal of Molecular Biology, 1995
- Effects of temperature on the fluorescence intensity and anisotropy decays of Staphylococcal nuclease and the less stable nuclease-conA-SG28 mutantBiochemistry, 1991